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Colorectal cancer prediction method and device based on marker gene and hybrid kernel function SVM

A hybrid kernel function and colorectal cancer technology, applied in medical data mining, medical automated diagnosis, medical informatics, etc., can solve the problem of not being able to correctly select a suitable classifier, not being able to solve problems well, and not being able to correctly select the number of features And other issues

Inactive Publication Date: 2018-10-02
SHANDONG NORMAL UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

At present, the use of machine learning algorithms to predict colorectal cancer mainly has the following problems: (1) redundant disease feature factors (2) inability to correctly select the number of features (3) inability to correctly select an appropriate classifier
However, when solving practical problems, people's usual practice is to pre-select a single kernel function based on the prior knowledge of experts, but this method often results in the selected kernel function having only a single property, which cannot solve the problem well.

Method used

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  • Colorectal cancer prediction method and device based on marker gene and hybrid kernel function SVM
  • Colorectal cancer prediction method and device based on marker gene and hybrid kernel function SVM
  • Colorectal cancer prediction method and device based on marker gene and hybrid kernel function SVM

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Embodiment 1

[0049] This embodiment discloses a method for constructing a support vector machine classifier for colorectal cancer prediction, such as figure 1 shown, including the following steps:

[0050] (1) Obtain sample data for preprocessing.

[0051] Obtain the relevant data set GSE50421 of colorectal cancer research in the GEO database, which is generally a CEL file beginning with GSE, including 24 colorectal cancer samples and 25 healthy samples. Use the software Affymetrix to preprocess these samples, including quality control and Quantile normalization, the result is as follows Figure 6 .

[0052] (2) Obtain gene expression information.

[0053] The obtained GSE50421 data set was divided into two groups: samples from healthy people and samples from patients with colorectal cancer. Use the online platform GEO2R tool to analyze the gene expression of these two sets of data, obtain all genes related to the disease, and use the volcano map drawing tool to draw the difference of ...

Embodiment 2

[0095] The purpose of this embodiment is to provide a computing device.

[0096] A support vector machine classifier construction device for colorectal cancer prediction, comprising a memory, a processor and a computer program stored on the memory and operable on the processor, the processor implements the following steps when executing the program ,include:

[0097] Obtain and preprocess the health and colorectal cancer sample data;

[0098] Determine the characteristic genes associated with the disease based on two sets of sample data;

[0099] Using Gaussian kernel function, polynomial kernel function and linear kernel function to construct hybrid kernel function support vector machine;

[0100] Optimize the parameters of the hybrid kernel support vector machine.

Embodiment 3

[0102] The purpose of this embodiment is to provide a computer-readable storage medium.

[0103] A computer-readable storage medium, on which a computer program is stored, and when the program is executed by a processor, the following steps are performed:

[0104] Obtain and preprocess the health and colorectal cancer sample data;

[0105] Determine the characteristic genes associated with the disease based on two sets of sample data;

[0106] Using Gaussian kernel function, polynomial kernel function and linear kernel function to construct hybrid kernel function support vector machine;

[0107] Optimize the parameters of the hybrid kernel support vector machine.

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Abstract

The invention discloses a support vector machine classifier construction method and a support vector machine classifier construction device for colorectal cancer prediction. The method comprises the steps of: acquiring health and colorectal cancer sample data and preprocessing the data; determining disease-related feature genes based on the two sets of sample data; utilizing a Gaussian kernel function, a polynomial kernel function and a linear kernel function to construct a hybrid kernel function support vector machine; and optimizing parameters of the hybrid kernel function support vector machine. The support vector machine constructed by adopting the method and the device is more suitable for performing classification based on marker genes and can save time for colorectal cancer judgment.

Description

technical field [0001] The invention belongs to the field of disease auxiliary prediction, and in particular relates to a colorectal cancer prediction method and device based on marker genes and mixed kernel function SVM. Background technique [0002] Colorectal cancer is one of the most common malignant tumors. About 1.2 million people around the world suffer from colorectal cancer every year, and as many as 600,000 patients die from the disease, which not only causes huge economic losses, but also has serious consequences for human health. serious threat. Early screening for the disease is key to successful treatment and patient survival, and is a major current public health challenge. The traditional diagnostic methods of colorectal cancer include X-ray examination, serum carcinoembryonic antigen (CEA) examination, endoscopy, etc. These methods play a vital role in the diagnosis of colorectal cancer, but the patient compliance of these methods is low , and it is necessa...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): G16H50/20G16H50/70
CPCG16H50/20G16H50/70
Inventor 刘弘赵丹丹郑元杰何演林陆佃杰吕晨
Owner SHANDONG NORMAL UNIV
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