Colorectal cancer prediction method and device based on marker gene and hybrid kernel function SVM
A hybrid kernel function and colorectal cancer technology, applied in medical data mining, medical automated diagnosis, medical informatics, etc., can solve the problem of not being able to correctly select a suitable classifier, not being able to solve problems well, and not being able to correctly select the number of features And other issues
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Embodiment 1
[0049] This embodiment discloses a method for constructing a support vector machine classifier for colorectal cancer prediction, such as figure 1 shown, including the following steps:
[0050] (1) Obtain sample data for preprocessing.
[0051] Obtain the relevant data set GSE50421 of colorectal cancer research in the GEO database, which is generally a CEL file beginning with GSE, including 24 colorectal cancer samples and 25 healthy samples. Use the software Affymetrix to preprocess these samples, including quality control and Quantile normalization, the result is as follows Figure 6 .
[0052] (2) Obtain gene expression information.
[0053] The obtained GSE50421 data set was divided into two groups: samples from healthy people and samples from patients with colorectal cancer. Use the online platform GEO2R tool to analyze the gene expression of these two sets of data, obtain all genes related to the disease, and use the volcano map drawing tool to draw the difference of ...
Embodiment 2
[0095] The purpose of this embodiment is to provide a computing device.
[0096] A support vector machine classifier construction device for colorectal cancer prediction, comprising a memory, a processor and a computer program stored on the memory and operable on the processor, the processor implements the following steps when executing the program ,include:
[0097] Obtain and preprocess the health and colorectal cancer sample data;
[0098] Determine the characteristic genes associated with the disease based on two sets of sample data;
[0099] Using Gaussian kernel function, polynomial kernel function and linear kernel function to construct hybrid kernel function support vector machine;
[0100] Optimize the parameters of the hybrid kernel support vector machine.
Embodiment 3
[0102] The purpose of this embodiment is to provide a computer-readable storage medium.
[0103] A computer-readable storage medium, on which a computer program is stored, and when the program is executed by a processor, the following steps are performed:
[0104] Obtain and preprocess the health and colorectal cancer sample data;
[0105] Determine the characteristic genes associated with the disease based on two sets of sample data;
[0106] Using Gaussian kernel function, polynomial kernel function and linear kernel function to construct hybrid kernel function support vector machine;
[0107] Optimize the parameters of the hybrid kernel support vector machine.
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