Biomarkers for ovarian cancer
A biomarker and ovarian cancer technology, applied in the field of biomarkers, can solve the problems of ineffectiveness and failure to improve the early detection rate or survival of ovarian cancer
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[0086] Materials and Methods
[0087]Data collection, preprocessing and normalization. Gene expression data from 7 human ovarian cancer studies were downloaded from NCBIGEO (Table 2). The dataset was filtered to include only normal and high-grade serous ovarian cancer samples. All datasets were individually normalized using gcRMA.
[0088] meta-analysis. Two methods of meta-analysis were performed on standardized data. The first method combines the effect sizes from each dataset into meta-effect sizes to estimate the amount of change in expression across all datasets. For each gene in each data set, effect sizes were calculated using Hedges' adjusted g. If more than one probe matches a gene, the effect size for each gene is summarized using the fixed-effects inverse variance model. Then, study-specific effect sizes were combined using the random-effects inverse variance technique to obtain mixed effect sizes and their standard errors. From the ratio of the mixed effect ...
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