Primer, probe and detection kit for determining beta-tubulin III gene expression
A tubulin and gene expression technology, which is used in the determination/inspection of microorganisms, biochemical equipment and methods, DNA/RNA fragments, etc. , the effect of simple calculation
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Embodiment 1
[0043] Source of sample tissue: 65 tissues from cancer patients who had not undergone chemotherapy were sent to our company for testing in 2010-2011. Among the 65 patients, there were 39 males and 21 females, including 54 adenocarcinomas and 11 squamous cell carcinomas.
[0044]Primer design and synthesis: Primers were designed according to the GeneBank sequence β-tubulin Ⅲ and the housekeeping gene β-actin. Primers and probes were designed using the Premier 5.0 software of Canada's Premier Company, and the sequences of the primers and probes are shown in Table 1.
[0045] Pathological tissue RNA preparation: For fresh pathological tissue, about 1 g was cut in a liquid nitrogen environment, mashed and RNA was extracted using an RNA extraction kit (Qiagen, Blood & Tissue Kit). The specific steps follow the operating instructions of the kit. For paraffin-embedded tissue samples, RNA was extracted using an RNA extraction kit (Qiagen, RNeasy FFPE kit), and the specific steps were...
Embodiment 2
[0061] Two cases of paraffin-embedded tissue samples from patients with adenocarcinoma who were sent to our company for detection in May 2011 were recorded as patient A and patient B. According to the detection kit and method described in Example 1, β-tubulin III mRNA was extracted, cDNA was synthesized, and real-time fluorescent PCR quantitative assay was carried out (the experimental steps were operated according to the operating steps of the kit instructions). Four gradient standards of β-tubulin Ⅲ cDNA and housekeeping gene β-actin were used as standard curves respectively, and the correlation coefficient between β-tubulin Ⅲ and housekeeping gene β-actin was 0.98. Record the value C1 of the test sample on the standard curve of the β-tubulin III gene, and the value C2 of the test sample on the standard curve of the internal reference gene β-actin.
[0062] Use the formula: Y=ln(C1 / C2)
[0063] The β-tubulin Ⅲ gene expression levels of the two patients were calculated respe...
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