Preparation method and application of hawthorn EST-SSR (Expression Sequence Tag-Simple Sequence Repeats) marker primer
A technology for labeling primers and hawthorn, which is applied in the fields of biochemical equipment and methods, microbial determination/inspection, DNA/RNA fragments, etc., can solve the problems of backwardness and less research on hawthorn genome background, and achieves the promotion of research level and improvement of research level. Effect
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[0024] See Figure 1-6 , A preparation method of hawthorn EST-SSR marker primer, including the following steps:
[0025] 1) Screen the fragment sequences with assembly length greater than 5000bp from the hawthorn transcriptome data for the subsequent development of hawthorn EST-SSR markers;
[0026] 2) Use SSRHunter software to perform SSR discovery on each fragment, and pick out EST sequences that are rich in two, three, four or pentanucleotide repeats and length ≥ 10bp from a single sequence;
[0027] 3) Use primer3 software to screen the EST-SSR primers for the 150bp upstream and downstream base sequences of the SSR to obtain the hawthorn EST-SSR marker primers. The length of the primer is 18-23bp, the annealing temperature is 55-63°C, the GC content is 40-60%, and the length of the PCR amplified product is 150-300bp. Preferably, the optimal primer length is 20 bp, the annealing temperature is 58° C., the GC content is 50%, and the PCR amplification product length is 200 bp.
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Embodiment 1
[0031] 1. Test materials: use the hawthorn variety'Da Mianqiu' as the female parent and'Autumn Jinxing' as the male parent to create a hybrid population, select 92 hybrid F1 generations as the mapping population, and construct a hawthorn molecular genetic map using SSR molecular marker technology;
[0032] 2. Select hawthorn varieties and the tender green leaves of hybrid plants to extract total DNA. Genomic DNA extraction is based on the improved CTAB method proposed by Ma Ming et al. (2007);
[0033] 3. Using the hawthorn EST-SSR marker primers of the present invention for analysis, the specific steps are as follows:
[0034] 3.1. EST-SSR screening and amplification;
[0035] 3.1.1. PCR reaction system: The SSR-PCR reaction system in this experiment is 16μL, and the components are as follows: 10×Buffer (containing Mg 2+ ) 1.6μL, dNTP 0.8μL (concentration 2.5mM / μL), primer 2*0.8μL (concentration 5nmol / μL), Taq polymerase 1μL (1U / μL), template DNA 1μL (20ng / μL), ddH2O 10μL;
[0036] 3.1...
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