Transcriptome-based tumor metastasis gene detection system
A technology of tumor metastasis and gene detection, applied in the field of tumor metastasis gene detection system
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[0027] It should be noted that, in the case of no conflict, the embodiments of the present invention and the features in the embodiments can be combined with each other.
[0028] The present invention will be described in detail below with reference to the accompanying drawings and examples.
[0029] figure 1 Shown is the algorithm flow of this software system, and the framework of the present invention is as follows:
[0030] 1. Integration module of Read count matrix
[0031] The integration module has a DESeq2.r unit, which is used to merge the HTseq output read count matrix and perform gene expression change calculation. It mainly includes two subunits count_matrix and DEGseq.
[0032] The integration module also has a readcount.r unit which is used to take the read count file of a single sample as input, firstly combine the read counts in all samples for each gene to obtain the sample-gene read count matrix, and then filter the matrix, Finally, the data integration wa...
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