Application of antisense deoxyribozyme capable of resisting agr quorum-sensing system in MRSA (Methicillin-Resistant Staphylococcus Aureus)
A deoxyribozyme and antisense technology, applied in the field of molecular biology, to achieve the effect of preventing the increase of bacterial drug resistance, weakening bacterial virulence, and reducing secretion
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Embodiment 1
[0017] Example 1 Design, synthesis and screening of DNAzyme against Staphylococcus aureus RNAIII mRNA
[0018] (1) Screen the effective targets of RNAIII mRNA and design specific and efficient DNAzyme: use RNA Structure4.5 software to analyze the sequence of RNAIII mRNA in detail and predict its secondary structure, with 30 bases as the basic length of DNAzyme, in the non-conserved sequence region, Effective targets were selected in the non-folding region, and seven optimal DNAzymes were screened out (see Table 1).
[0019] Table 1 DNAzymes designed for RNAIII mRNA
[0020]
[0021] Note: The underline in the sequence column represents the catalytic active center of DNAzyme.
Embodiment 2
[0022] Example 2 DNAzyme study on the minimum inhibitory concentration of LAC
[0023] The micro-plate MIC assay method is used as a screening method for effective antibacterial antisense targets. The inventors first measured the MIC of 7 anti-RNAIII DNAzyme sequences (anti-RNAIII DNAzyme 23, 70, 72, 105, 109, 232-1 and 232-2) to LAC, and the results showed that none of the 7 DNAzymes had antibacterial activity ( See Table 2).
[0024] Table 2 The minimum inhibitory concentration (MIC) of DNAzyme to LAC
[0025]
Embodiment 3
[0026] Example 3 RT-PCR detection of the influence of DNAzyme on the expression changes of RNAIII
[0027] The fresh overnight cultured bacterial solution was transferred to nutrient broth medium, cultivated at 35°C and 210rpm to the mid-logarithmic growth phase, and DNAzyme23 of different concentrations was added to the culture medium, and incubated for 6 hours. After the culture, the bacteria were collected, the total RNA of the bacteria was extracted by the Trizol method, and the cDNA obtained by reverse transcription was used as a reaction template. The RT reaction conditions were: 37 ° C, 60 min, and PCR was performed after ice bathing. PCR reaction conditions: pre-denaturation at 95°C for 2min, denaturation at 95°C for 30sec, annealing at 55°C for 30sec, extension at 72°C for 30sec, 40 cycles. PCR primers: 5'-TTCAATGGCACAAGAT-3' and 5'-GTCCAAGGAAACTAAC-3'. figure 1 The results showed that the three sequences of DNAzyme23, DNAzyme72 and DNAzyme232-1 among the seven anti...
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