Inhibition of Vegf-A secretion, angiogenesis and/or neovascularization by sina-mediated knockdown of Vegf-C and RhoA
A technology of VEGF-C and VEGF-A, applied in DNA/RNA fragments, cardiovascular system diseases, recombinant DNA technology, etc., can solve problems such as differences in signaling pathways, and achieve minimal side effects
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[0174] 2. Preparation of siNA;
[0175] 3. Compound efficacy test;
[0176] 4. Comparative data for siRNAs having 19-30 nucleotides, for example 21, 22 and 27 nucleotides; and
[0177] 5. Efficacy evaluation in animal models.
[0178] In one example, the design of suitable siNAs includes the design of siRNAs with 21, 23 and 27 nucleotides for modulation of RhoA and VEGF-C, without chemical modifications. Accessible sites of target genes such as RhoA and VEGF-C were screened and siRNAs were synthesized considering the open reading frames (ORFs) of RhoA and VEGF-C.
[0179] Consider the following general requirements in siNA design:
[0180] i. Four or more A, T, G or U not in a row consecutively
[0181] ii Avoid the following sequences as they can elicit an interferon response.
[0182] A) 5'-UGUGU-3' and B) 5'-GUCCUUCAA-3'
[0183] iii. The first 200 bases were deleted from the start codon to avoid binding regulatory elements.
[0184] iv. Each siNA duplex was tested i...
Embodiment 1
[0205] Example 1: Design of 21, 22, 23 and 27mer siIRNAs for regulation of RhoA and VEGF-C gene expression
[0206] Identification of target sites:
[0207] Based on the literature: Henshel, A et al., "DEQOR: A web based tool for the design and quality control of siRNAs," (DEQOR: Internet-based tools for the design and quality control of siRNA) Nucleic Acids Res.2004; 32: Wl 13-W120; Ui-Tei, K, et al., "Guidelines for the selection of highly effective siRNA sequences formammalian and chick RNA interference," (for the selection guideline of the efficient siRNA sequences for the RNA interference of mammals and chicks ) Nucleic Acid Res.2004; 32(3):936-48; Sui, G., et al., "A DNA vector based RNAi technology to suppress gene expression in mammalian cells," (DNA vector based on RNAi technology in mammalian cells Suppression of gene expression in plasmacytoid dendritic cells through TLR7) Proc.Natl.Acad.Sci USA 2002;26(2):199-213; Kim, D.H., et al., "Synthetic dsRNA dicer-substrat...
Embodiment 2
[0226] Example 2: Preparation of siNA molecules
[0227] The siNA molecules were synthesized chemically using commercially available tools. Based on the type of protecting group bound at the 2′-carbon site of ribose, chemical methods are classified as follows:
[0228] 1.2'-tert-butyldimethylsilyl (TBDMS)
[0229] 2.2'-O-triisopropylsilyloxymethyl (TOM)
[0230] 3. 2′-Acetoxyethoxy Chemistry (ACE)
[0231] Cycling begins with the 3'-terminal nucleotide attached to a solid support material or bead. The second nucleotide binds to the 5-hydroxyl group of the first nucleotide. Capping effectively prevents the extension of wrong or short nucleotides. And then oxidize the phosphate bonds between nucleotides to the final P(V) state. Finally, the 5'-protecting group on the new nucleotide is removed and the extending oligonucleotide is ready for the addition of the next nucleotide. Once the nucleic acid molecule reaches the desired length, it is further deprotected, cleaved from...
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