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System generation tree diagram manufacturing method and system thereof

A technology of a phylogenetic tree and a method for making a phylogenetic tree is applied in the field of a method and system for making a phylogenetic tree diagram, which can solve the problems of a tree diagram taking a lot of time and a complex tree diagram drawing process, and achieve the effect of a simple, feasible and highly adaptable drawing process.

Pending Publication Date: 2019-04-26
INST OF BASIC MEDICINE OF SAMS
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Problems solved by technology

[0005] The inventors found that the drawing process of the existing phylogenetic tree diagram is complicated, and it takes a lot of time to generate the phylogenetic tree diagram

Method used

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  • System generation tree diagram manufacturing method and system thereof
  • System generation tree diagram manufacturing method and system thereof
  • System generation tree diagram manufacturing method and system thereof

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Embodiment Construction

[0056] It should be noted that the following detailed description is exemplary and intended to provide further explanation of the present disclosure. Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this disclosure belongs.

[0057]It should be noted that the terminology used herein is only for describing specific embodiments, and is not intended to limit the exemplary embodiments according to the present disclosure. As used herein, unless the context clearly dictates otherwise, the singular is intended to include the plural, and it should also be understood that when the terms "comprising" and / or "comprising" are used in this specification, they mean There are features, steps, operations, means, components and / or combinations thereof.

[0058] Explanation of terms:

[0059] Next-generation sequencing: It can sequence hundreds of thousands to millions of DNA mole...

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Abstract

The invention provides a system generation tree diagram manufacturing method and a system thereof, wherein the system generation tree diagram manufacturing method comprises the steps of clustering microbe genome second-generation sequencing data, clustering the microbe genome sequence with similarity which is higher than a preset threshold for forming one OTU, wherein each OUT corresponds with onemicrobe kind, and generating OTUs table data; screening a representative sequence in the OTUs table data; comparing the screened representative sequence with reference sequence data, if similarity ishigher than or equal with a preset threshold, determining successful comparison; and otherwise, determining failed comparison; respectively storing the representative sequence after successful comparison and the sequence after failed comparison into a successful comparison set and a failed comparison set; screening the successful comparison sequence which contains preset information from the successful comparison set, and generating a phylogenetic tree file; and performing patterning processing on the phylogenetic tree file and generating a phylogenetic tree diagram.

Description

technical field [0001] The present disclosure relates to the field of data processing, in particular to a method and system for making a phylogenetic tree diagram. Background technique [0002] The statements in this section merely provide background information related to the present disclosure and do not necessarily constitute prior art. [0003] Bacterial 16S rRNA gene (16S rDNA or 16S rRNA gene) is a gene encoding the small subunit of prokaryotic ribosome, the length is about 1542bp, the mutation rate in the process of bacterial evolution is relatively small, and its molecular size is moderate, it is a bacterial system The most commonly used and useful molecular markers in taxonomic studies. 16srDNA contains 9 variable regions (V1-V9) and 10 conserved regions distributed continuously and alternately with them. If the V3-V4 single (or double) variable region is amplified and next-generation sequencing (Next-generation"sequencing technology, NGS), which can predict the s...

Claims

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Application Information

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IPC IPC(8): G16B30/00G16B40/00
Inventor 刘红艳李莲莲张晓瑜阴海鹏刁玉涛成丽娟张之勇俞勇
Owner INST OF BASIC MEDICINE OF SAMS
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