An epigenome-based drug discovery method and its application
A discovery method and genome technology, applied in the fields of genomics, proteomics, bioinformatics, etc., can solve the problem of not getting a corresponding return on investment, and achieve the effect of solid theoretical foundation, easy implementation, and high efficiency
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Embodiment 1
[0050] Example 1 Use the method of the present invention to carry out drug discovery for type Ⅱ diabetes
[0051] The flow chart of the epigenome-based drug discovery method of the present invention is as follows figure 1 shown.
[0052] Using the method of the present invention to carry out drug discovery for type II diabetes comprises the following steps:
[0053] (1) Obtain the DNA methylation chip data of type 2 diabetes patient samples and control samples
[0054] The DNA methylation microarray data (data set ID: GSE34008, Illumina HumanMethylation27 chip) of type 2 diabetes patient samples and control samples were obtained from the GEO database. The data set contains 12 samples of type 2 diabetes patients and 12 samples of normal controls, and the tissue of the samples is whole blood tissue. Delete the probes marked with "NA" in the sample, and get 27,070 DNA methylation probe values for each sample, that is, the β value, representing the degree of DNA methylation a...
Embodiment 2
[0071] Example 2 Drug discovery for atherosclerosis using the method of the present invention
[0072] Drug discovery for atherosclerosis using the method of the present invention comprises the following steps:
[0073] (1) Obtain the DNA methylation chip data of atherosclerosis patient samples and control samples
[0074] The DNA methylation microarray data (data set ID: GSE46394, Illumina HumanMethylation450 chip) of atherosclerosis patient samples and control samples were obtained from the GEO database. The data set contains 34 atherosclerosis patient samples and 15 normal control samples, and the tissue of the sample is carotid artery tissue. Delete the probes marked with "NA" in the sample, and get 473,291 DNA methylation probe values for each sample, that is, the β value, representing the degree of DNA methylation at each site, and then according to the platform (GPL13534) probe The corresponding relationship between the sample data probe name and the gene name. If ...
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