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Micro-array chip detection method for 10 on-melon diseases and used chip probe

A microarray chip and detection method technology, applied in biochemical equipment and methods, microbial measurement/testing, chemical library, etc., can solve problems such as low sensitivity, long separation cycle, affecting detection results, etc., and shorten the identification process , Accelerate the speed of port inspection and release, and the effect of accurate inspection and quarantine

Inactive Publication Date: 2016-02-03
新疆出入境检验检疫局检验检疫技术中心
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AI Technical Summary

Problems solved by technology

In Xinjiang Bureau’s melon seed export trade, there are hundreds of batches of testing requirements for these 10 diseases every year. When faced with a large number of testing samples, especially when the same sample is required to detect multiple diseases, it is difficult to achieve high throughput. Rapid simultaneous multi-disease detection, especially for fungal and bacterial diseases with a very long separation cycle and high experience requirements. It is difficult to determine positive samples and the sensitivity is not high, which greatly affects the final detection results.

Method used

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  • Micro-array chip detection method for 10 on-melon diseases and used chip probe
  • Micro-array chip detection method for 10 on-melon diseases and used chip probe
  • Micro-array chip detection method for 10 on-melon diseases and used chip probe

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preparation example Construction

[0247] 2.3 Preparation of oligonucleotide chips

[0248] According to the chip array arrangement (as shown in Table 6), various detection and quality control probes were spotted on the aldehyde-based substrate, fixed for 24 hours, washed, and scanned. Pre-scan results such as figure 2 , the positive localization control sample spot is clear and uniform, the background of the chip is low, and no fluorescent signal appears at other probe sites, which is suitable for the subsequent hybridization of the experiment.

[0249] Table 6. Arrangement of gene chip probes

[0250]

[0251]

[0252] Note: The array is 9 rows and 10 columns, the upper and lower rows are DW positive positioning controls, and the other probes are repeated 5 times.

[0253] 2.4 Optimization of hybridization reaction system

[0254] 2.4.1 Hybridization time

[0255] Four hybridization times were set for optimization, namely 30min, 60min, 90min, and 120min. Hybridization results such as image 3 . ...

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Abstract

The invention discloses a micro-array chip for 10 on-melon diseases, and also discloses a micro-array chip detection method for the 10 on-melon diseases by using the chip. The following steps are executed in sequence for each to-be-tested sample: 1) extracting the DNA of the to-be-tested sample; 2) performing a PCR reaction on a primer fluorescent marker; 3) mixing volume-equal PCR amplification products corresponding to at least two germs obtained by step 2); 4) chip-hybridizing and washing: denaturating one PCR amplification product corresponding to each germ obtained by step 2) or a mixture obtained by step 3) at 95 DEG C for 5min, and then ice-bathing for 5min to obtain after-pretreatment PCR amplification products; then chip-hybridizing and washing the after-pretreatment PCR amplification products, wherein the chip-hybridizing is performed at 45 DEG C for 1h; 5) scanning the chip to acquire a detection result.

Description

technical field [0001] The invention relates to the field of plant disease detection, in particular to a microarray chip detection method for 10 kinds of diseases on melons and the chip probes used. Background technique [0002] With the development of molecular biology technology, the detection technology of plant diseases has developed from traditional morphological identification to the current level of molecular detection, and has made great progress in various aspects such as detection speed, sensitivity and accuracy. The application of serological detection, common PCR detection technology, and fluorescent PCR detection technology has made the detection of diseases more advanced in terms of sensitivity, specificity, and accuracy. Requirements, the emergence of gene chip technology, the sample detection and analysis process to achieve continuous, integrated and miniaturized, and has a high-throughput, high-sensitivity detection level, can simultaneously detect a variety...

Claims

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Application Information

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IPC IPC(8): C40B40/06C12Q1/70C12Q1/68C12Q1/04
Inventor 王翀高全孙燕飞雷勇辉张小菊李亚伟张祥林张伟巴哈提古丽·马那提拜
Owner 新疆出入境检验检疫局检验检疫技术中心
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