A kind of primer combination, probe combination and its application in detecting porcine virus, detection reagent, kit and detection method
A detection reagent and primer combination technology, applied in the field of probe combination and its application in the detection of porcine virus, and primer combination, can solve the problems of difficult clinical sample detection, and achieve improved detection efficiency, cost saving, and simple operation Effect
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Embodiment 1
[0068] Embodiment 1: This embodiment provides a method for joint detection of five porcine viruses. Specifically, a five-fold fluorescent quantitative PCR detection method was established to establish a joint detection method for five porcine viruses.
[0069] 1. Design of primers and TaqMan probes
[0070] The B646L gene sequences of different African swine fever virus (ASFV) strains published by GenBank (accession numbers: MN393476.1, MN715134.1, MN172368.1, LR743116.1, MK333180.1, MH910495.1, MN336500.2); 3D gene sequences of foot-and-mouth disease virus (FMDV) strains (accession numbers: FJ175661.1, GU384683.1, DQ989323.1, DQ989308.1, FJ175662.1, FJ175665.1, MF372126.1, DQ989320. 1); Nsp2 gene sequence of porcine reproductive and respiratory syndrome virus (PRRSV) strain (accession numbers: NC_043487.1, EF635006.1, EF112445.1, EF641008.1, AY150564.1, MH500776.1, MN119307.1 , KP771777.1); 5´UTR gene sequence of classical swine fever virus (CSFV) strain (accession numbers:...
Embodiment 2
[0127] Example 2: Sensitivity Verification of Five-fold Fluorescent Quantitative PCR Detection Method
[0128] ASFV (5.8 × 10 4 copies / μL), FMDV (8.1×10 4 copies / μL), CSFV (5.1×10 4 copies / μL), HP-PRRSV (9.7×10 4 copies / μL), PRV wild virus (7.6×10 4 copies / μL) Take 10 μL of each nucleic acid and mix evenly (concentrations: 1.16×10 4 copies / μL, 1.62×10 4 copies / μL, 1.02×10 4 copies / μL, 1.94×10 4 copies / μL, 1.52×10 4 copies / μL) after serial dilution of 10 times, 100 times, 1000 times and 10000 times, then used as a template for five-fold fluorescent quantitative PCR detection, each gradient was repeated 3 times, and the minimum detection limit and linearity of the five-fold fluorescent quantitative PCR method were calculated. relation. Amplification results such as Image 6 As shown in Table 11, ASFV is the standard curve of the Texas Red channel (No. 1-Texas Red) regression equation is Y= -3.251X+40.547, and the correlation coefficient (R 2 ) was 0.990, the a...
Embodiment 3
[0131] Embodiment 3: Five-fold fluorescent quantitative PCR detection method specific verification
[0132] FMDV (A type, O type, Asian type I), PRRSV (LV strain, JXA1 strain, VR2332 strain), CSFV (C strain), PRV standard strain, PRV vaccine strain (Bartha -K61 strain), TGEV-PEDV - PoRV was extracted according to step 3 of Example 1, and then the nucleic acid of the ASFV positive sample was used as a template for five-fold fluorescent quantitative PCR detection.
[0133] Test results such as Figure 7 As shown, except ASFV (No. 1), FMDV-A (No. 2), FMDV-O (No. 3), FMDV-Asia Ⅰ (No. 4), PRRSV-JXA1 (No. 5), CSFV (No. 6), PRV Except for wild virus (No. 7), other viruses (No. 8-10) were not detected, indicating that this method has no cross-reaction with other viruses, and can specifically detect ASFV, FMDV, HP-PRRSV, CSFV and PRV wild poison.
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