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Construction method of unified diagnosis-prognosis-recurrence model for patients with hepatocellular carcinoma

A technology for hepatocellular carcinoma and its construction method, which is applied in the construction of a unified model for prognosis and recurrence, and in the field of hepatocellular carcinoma diagnosis, which can solve the problems of lack of comprehensive understanding, limited treatment strategies, and lack of combined analysis.

Pending Publication Date: 2020-07-10
BEIJING EIRENE BIOTECH INC
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Problems solved by technology

However, most studies mainly focused on methylation or gene expression data, and joint analyzes were not performed
Thus, a comprehensive understanding of the cellular and molecular mechanisms driving HCC is lacking, limiting therapeutic strategies

Method used

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  • Construction method of unified diagnosis-prognosis-recurrence model for patients with hepatocellular carcinoma
  • Construction method of unified diagnosis-prognosis-recurrence model for patients with hepatocellular carcinoma
  • Construction method of unified diagnosis-prognosis-recurrence model for patients with hepatocellular carcinoma

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Embodiment Construction

[0026] Below in conjunction with concrete experiment the present invention is described in detail:

[0027]The present invention: a method for constructing a unified model for the diagnosis, prognosis and recurrence of patients with hepatocellular carcinoma, specifically comprising the following steps:

[0028] Step 1: Data collection and analysis

[0029] 1) Collect patient samples

[0030] A total of 421 RNA-sequencing data (371 HCC samples and 50 non-tumor samples), 430 DNA methylation data (380 HCC samples and 50 non-tumor samples) and Corresponding clinical information of HCC patients. Of the 380 HCC samples for which DNA methylation data were available, 371 of these HCC samples contained both RNA-Seq data and paired DNA methylation data. Of the 371 TCGA HCC samples, 365 included overall survival (OS) and survival status, while 317 included disease-free survival time and recurrence status. HCC gene expression data were obtained from the TCGA database using the Illumin...

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Abstract

The invention discloses a construction method of a unified diagnosis-prognosis-recurrence model for patients with hepatocellular carcinoma. The method comprises the following steps: step 1) collectinggene expression data and DNA methylation data of hepatocellular carcinoma; step 2) analyzing the gene expression data and the DNA methylation data of the hepatocellular carcinoma, and identifying DNAmethylation driver genes in hepatocellular carcinoma; and step 3) establishing a diagnosis-prognosis-recurrence model for the patients with hepatocellular carcinoma through single-factor Cox regression, minimum absolute constriction and selection operator regression analysis and multi-factor Cox regression analysis on the DNA methylation driver genes in the hepatocellular carcinoma. The unified diagnosis-prognosis-recurrence model composed of the three DNA methylation driver genes is found and verified, so a novel research direction is provided for screening of hepatocellular carcinoma biomarkers, and new possibility is provided for individualized treatment of the patients with hepatocellular carcinoma.

Description

technical field [0001] The invention relates to the field of biology, in particular to a method for constructing a unified model for the diagnosis, prognosis and recurrence of hepatocellular carcinoma (HCC). Background technique [0002] Hepatocellular carcinoma (HCC) is the most common type of liver cancer, the third leading cause of cancer-related death, and the leading aggressive malignancy worldwide. Liver cancer is a multistep and complex disease involving a series of genetic and epigenetic alterations, including genomic deletions, amplifications, mutations and / or insertions. Early diagnosis and interventional therapy, as well as the development of therapeutic and surgical approaches, have led to major advances in the treatment of this cancer. However, the vast majority of patients with advanced HCC have a poor prognosis when diagnosed. Therefore, there is an urgent need to better understand the functional pathways and molecular mechanisms of HCC, as well as to develo...

Claims

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Application Information

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IPC IPC(8): G16B5/00G16B20/00G16B30/10C12Q1/6886
CPCG16B5/00G16B30/10G16B20/00C12Q1/6886C12Q2600/118C12Q2600/154C12Q2600/158
Inventor 龙俊宇赵海涛
Owner BEIJING EIRENE BIOTECH INC
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