System for diagnosing osteoarthritis subtype through blood sample based on machine learning
A technology of osteoarthritis and machine learning, applied in medical automated diagnosis, instrumentation, informatics, etc., can solve the problem of difficulty in obtaining cartilage tissue
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[0068] PBMC data analysis of 33 normal people from 106 OA patients in GEO database
[0069] The data is downloaded from the GEO database GSE48556, derived from the peripheral blood mononuclear cell (PBMC) gene chip sequencing data of osteoarthritis patients and normal people.
[0070] according to figure 1 Analyze the gene expression from 139 clinical samples using R language limma program package for principal component analysis to obtain differentially expressed genes and clusters. Principal component analysis (PCA) results show that 106 clinical patients with osteoarthritis can be clearly divided into two groups ( figure 2 ). Further comparison of samples from patients with osteoarthritis and normal people, we can get 1502 differential expressions between tissues (adj.P.Val image 3 ). Gene ontology analysis and GSEA analysis of differential genes indicate that genes in clinical patients with osteoarthritis are mainly involved in metabolic reactions and are also related to ap...
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