Molecular marker of loin-eye area character-related gene SVEP1 and application of molecular marker

A technology related to molecular markers and molecular markers, which is applied in the determination/inspection of microorganisms, DNA/RNA fragments, recombinant DNA technology, etc., and can solve problems such as stress caused by measuring environmental influences, affecting breeding effects, time-consuming and labor-intensive, etc.

Inactive Publication Date: 2016-09-28
HUAZHONG AGRI UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

(Liu Xiaochun. Pig Molecular Breeding and Application Prospect. Porcine Science. 2011(07): 100-3.) Usually, the eye muscle area is usually measured by the slaughter method, but in large-scale breeding, this method not only Time-consuming and labor-intensive, and it can only measure post-mortem individuals, which has great limitations
Although A-ultrasound and B-ultrasound have certain applications in measuring the eye muscle area of ​​living pigs, the measurement results are easily affected by various aspects, such as: pigs cannot be completely stabilized, and are easily affected by the measurement environment and cause stress, etc. Therefore, The use of such methods in large-scale breeding work will introduce a large number of inaccurate factors, which will eventually affect the breeding effect (Yang Xiujuan, Deng Bin, etc. Research on live A-ultrasound measurement technology of pig backfat thickness and eye muscle thickness: [J]. Northwest Agriculture and Forestry Journal of University of Science and Technology, 2014, 42(5): 23-27; Liu Wei, Wu Haohao, etc. Uncertainty assessment of pig backfat thickness and eye muscle area in live pigs: [J]. Shanghai Animal Husbandry and Veterinary Communication, 2013, 6:77)

Method used

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  • Molecular marker of loin-eye area character-related gene SVEP1 and application of molecular marker
  • Molecular marker of loin-eye area character-related gene SVEP1 and application of molecular marker
  • Molecular marker of loin-eye area character-related gene SVEP1 and application of molecular marker

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Experimental program
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Effect test

Embodiment 1

[0061] Acquisition of a Molecular Marker Associated with Eye Muscle Area Traits:

[0062] 1) Primer design and partial DNA sequence amplification of porcine SVEP1 gene

[0063] Using the porcine SVEP1 gene sequence information (GenBank accession number: ENSSSCG00000005455) as the template sequence for primer design, use the biological primer design software Oligo7.0 to design primers. The primer sequences are as follows:

[0064] Forward primer: 5'-TGTCGCATGTGCTTGGTAGAT-3';

[0065] Reverse primer: 5'-GAACCTGGACTTCAAGGGACCATTCTTCCTCTCTCAACATC-3';

[0066] 2) PCR amplification reaction:

[0067] Using the TIANamp Genomic DNA Kit kit (purchased from Invitrogen, USA) from the experimental group of purebred American large white castrated pigs (this group comes from Hubei Jinlin Breeding Farm) (slaughter measurement and sampling were divided into 21 batches, and the number of individuals was determined A total of 207 pigs, all of which were American purebred Large White castrate...

Embodiment 2

[0073] A detection method based on molecular markers related to eye muscle area traits, the steps are as follows:

[0074] Establishment of PCR-RFLP diagnostic method

[0075] 1) Primer sequence

[0076] Forward primer: 5'-TGTCGCATGTGCTTGGTAGAT-3';

[0077] Reverse primer: 5'-GAACCTGGACTTCAAGGGACCATTCTTCCTCTCTCAACATC-3';

[0078] The length of the fragment amplified by the primer is 579bp, and its sequence is shown in SEQ ID NO.2.

[0079] 2) PCR amplification conditions

[0080] The total volume of PCR reaction is 10 μl, including 1 μl of porcine genomic DNA template to be tested, 0.2 nmol / μl of forward and reverse primers, 5 μl of PCR mix, and finally adding deionized water to a total volume of 10 μl. The PCR reaction conditions were as follows: 95°C pre-denaturation for 5 minutes, followed by 31 cycles of 95°C denaturation for 30 s, 60°C annealing for 30 s, and 72°C extension for 36 s; finally, 72°C extension for 5 min; PCR products were detected by 2% agarose gel elect...

Embodiment 3

[0085] Application of a molecular marker related to eye muscle area traits in polymorphism detection in different pig populations, the steps are:

[0086] PCR-Sfan I-RFLP was used to detect the purebred American large white castrated pig experimental group (the group came from Hubei Jinlin Breeding Farm) (207 American purebred large white castrated boar groups). The genotype and gene frequency of the mutation site in the experimental population are shown in Table 1. The test results show that there are three genotypes of the SVEP1 gene in the experimental population, of which there are 47 AA-type individuals and 99 AG-type individuals , there were 61 individuals of GG type, and the detection result of enzyme digestion typing was consistent with the sequencing result, and the detection method of the present invention was reliable. The results indicated that allele G of SVEP1 gene was dominant in the experimental population of purebred American large white castrated pigs.

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Abstract

The invention relates to the field of preparation of a swine molecular marker, in particular to a molecular marker of a loin-eye area character-related gene SVEP1 and an application of the molecular marker. According to the molecular marker, the sequence of the SVEP1 gene comprises an SNP site which is located on the 44660bpth part of a nucleotide sequence shown as SEQ ID NO.1, and the site is an A / G base mutation which causes SfanI-RFLP polymorphism. The base mutation, which is located within the 3rd intron of the SVEP1 gene, cannot change an amino acid sequence which is translated by the base mutation. Therefore, a sequence, which is shown as SEQ ID NO.2, of the molecular marker can be obtained by designing a primer nearby the SNP site of the SVEP1 gene sequence, and subsequently, loin-eye area characters can be identified. According to the patent, on the basis of an existing PCR-RFLP technology, the A / G mutation is discovered on the 44660bpth part of the SVEP1 gene, and it discovers that the polymorphic site is significantly related to the loin-eye area characters; therefore, the patent is helpful for swine growth character researches to a certain degree.

Description

technical field [0001] The invention relates to the field of porcine molecular marker preparation, in particular to a molecular marker of eye muscle area trait-related gene SVEP1 and its application. Background technique [0002] Animal husbandry occupies a very important position in the development of modern agriculture, and its ratio in agricultural production is usually used as an important indicator to measure the development level of a country and region. Pork is the most important source of meat in China, and the pig breeding industry occupies a pivotal position in my country's animal husbandry. In the mid-1980s, my country’s meat output was about 20 million tons, and pork accounted for about 85%. In 2012, pork output reached 53.35 million tons, accounting for about 63.63% of the total meat. Although the proportion of pork has gradually decreased, it has always occupied a dominant position. [0003] With the development of society and the improvement of consumption l...

Claims

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Application Information

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IPC IPC(8): C12Q1/68C12N15/11
CPCC12Q1/6888C12Q2600/124C12Q2600/156
Inventor 李长春罗文哲邹成李菁璇张皓源吴宇胡岸赵书红余梅李新云
Owner HUAZHONG AGRI UNIV
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