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Method and device for processing file needing mutation detection

A technology of mutation detection and processing method, applied in the field of processing files to be detected by mutation, can solve the problems of complex operation, no solution proposed, single function of mutation detection method, etc., and achieve the effect of simplifying design and operation

Active Publication Date: 2014-03-05
BEIJING NOVOGENE TECH CO LTD
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0005] Aiming at the problems of single function and complex operation of the mutation detection method for complex types of comparison data in the related art, no effective solution has been proposed so far. Therefore, the main purpose of the present invention is to provide a processing method for files to be detected by mutation and devices to solve the above problems

Method used

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  • Method and device for processing file needing mutation detection
  • Method and device for processing file needing mutation detection
  • Method and device for processing file needing mutation detection

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Embodiment 1

[0016] In its most basic configuration, the figure 1 is a flow chart of a method for processing a file to be detected for mutation according to an embodiment of the present invention; figure 2 It is a detailed flow chart of a method for processing a file to be detected for mutation according to an embodiment of the present invention.

[0017] like figure 1 As shown, the processing method of the file to be detected by mutation comprises the following steps:

[0018] Step S10, acquiring comparison data according to the file to be detected for mutation.

[0019] Step S30, performing preprocessing and / or correction processing on the comparison data to obtain comparison data for variation detection. Specifically, this step implements preprocessing of comparison data to obtain comparison data that can be used for initial variation detection analysis, and then further optimizes the comparison results according to the training data set to obtain final comparison data for variation...

Embodiment 2

[0087] In describing the details of various embodiments of the invention, reference will be made to image 3 A suitable computing architecture that can be used to implement the principles of the invention is described. In the following description, unless indicated otherwise, embodiments of the invention are described with reference to acts and symbolic representations of operations that are performed by one or more computers. It will thus be appreciated that such acts and operations, which are sometimes referred to as computer-implemented, include the manipulation of electrical signals representing data in a structured form by the processing unit of a computer. This manipulation transforms the data or maintains it at a location in the computer's memory system, which reconfigures or changes the operation of the computer in a manner well understood by those skilled in the art. A data structure that maintains data is a physical location in memory that has specific properties de...

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Abstract

The invention discloses a method and device for processing a file needing mutation detection. The method includes the first step of obtaining comparison data according to the file needing mutation detection, the second step of carrying out preprocessing and / or correction processing on the comparison data to obtain the comparison data used for mutation detection, the third step of carrying out mutation detection on the comparison data used for mutation detection to obtain a mutation detection result, and the fourth step of carrying out advanced treatment on the obtained mutation detection result and then outputting the result. Through the method and device, the mutation detection method can be used for various types of comparison data, and meanwhile the mutation detection design and operation are simplified.

Description

technical field [0001] The invention relates to the field of biological information processing, in particular to a method and device for processing files to be detected for mutation. Background technique [0002] Existing mutation detection software, such as Samtools, SOAPsnp, DIndel, realSFS, GATK, etc., usually has the following three main design forms: first, the basic information statistics for mutation detection are generated after the comparison data is input, and the previous comparison data The processing, execution of mid-term mutation detection, and late-stage mutation data filtering all need to rely on other tools and self-design; second, after inputting comparison data, a single mutation detection method can be executed and redundant mutation data results can be generated, but The processing of comparison data in the early stage and the filtering of mutation data in the later stage still need to rely on other tools and self-design; the third is to provide some in...

Claims

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Application Information

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IPC IPC(8): G06F17/30G06F19/18
CPCG16B50/00
Inventor 闫军吴俊张钰
Owner BEIJING NOVOGENE TECH CO LTD
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