A method and system for download, installing, and manage bioinformatics software and databases

A bioinformatics and management system technology, applied in the field of downloading, installing and managing bioinformatics software and databases, can solve the problems of being blocked, downloading and installing certain software and database obstacles, slow speed, etc.

Inactive Publication Date: 2019-02-12
RUIJIN HOSPITAL AFFILIATED TO SHANGHAI JIAO TONG UNIV SCHOOL OF MEDICINE
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

At the same time, due to the very slow speed of connecting to certain websites in China, or being blocked, there are great obstacles to downloading and installing certain software and databases

Method used

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  • A method and system for download, installing, and manage bioinformatics software and databases
  • A method and system for download, installing, and manage bioinformatics software and databases

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Embodiment 2

[0049] Such as figure 2 As shown, a system for downloading, installing and managing bioinformatics software and database, said system for downloading, installing and managing bioinformatics software and database includes: tool kit, version management system, tool metadata management system and tools Automated deployment system; the version management system is used to obtain the version information of the biological information analysis tool, and detects related dependencies; the tool metadata management system is used to record the resource address and local installation of the biological information analysis tool, and the tool The automated deployment system is used to automatically download selected tools and deploy them using corresponding installation scripts.

[0050] Wherein, the toolkit is a collection of various bioinformatics software and database collection packages collected and organized in the cloud.

[0051] Advantages of the implementation of the present inve...

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Abstract

The invention discloses a method for downloading, installing and managing biological information software and database, which comprises the following steps: collecting and sorting various biological information analysis tools; storing in the cloud and build management systems; defining management rules for the use of tools; providing tools to the requesting user based on usage management rules. Asystem for download, installing and manage bioinformatics software and databases is also disclosed. Used to manage, download and install all kinds of bioinformatics software and databases, which can automatically complete the download and installation of a large number of bioinformatics software and databases, and to manage the local bioinformatics software and databases. By unifying the downloadand installation process, it provides a more automated way to complete the download, installation and management of bioinformatics software and databases.

Description

technical field [0001] The invention relates to the technical field of biological information analysis, in particular to a method and system for downloading, installing and managing biological information software and databases. Background technique [0002] In recent years, databases and software related to bioinformatics analysis have been increasing, and people are increasingly relying on related analysis software and data. Therefore, in the process of bioinformatics-related analysis, it is very important to build the relevant analysis environment and download the corresponding database resources. [0003] At present, in addition to uploading to relevant software management warehouses (such as CRAN, CPEN, Bioconductor, PyPI, Conda, Bioconda), there are still a large number of software and databases that require users to enter the websites designated by relevant software or databases to download and install. For example, human reference genome sequence, GATK-dependent res...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): G06F8/61H04L29/08
CPCG06F8/61H04L67/10H04L67/34
Inventor 黄金艳李剑峰
Owner RUIJIN HOSPITAL AFFILIATED TO SHANGHAI JIAO TONG UNIV SCHOOL OF MEDICINE
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