Quantitative detection method of escherichia coli in soil and assay kit thereof
A technology for Escherichia coli and quantitative detection, which can be used in microorganism-based methods, microbial determination/inspection, biochemical equipment and methods, etc. Economic and social benefits, reducing tedious steps and improving detection efficiency
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Embodiment 1
[0033] Using representative Escherichia coli DH5α strain as the experimental strain, prepare a series of concentration gradient Escherichia coli and add them to the sterilized soil for correlation analysis of plate colony counting method and MPN counting method counting results. Escherichia colonies were inoculated into 100ml LB liquid medium, cultured at 30°C with shaking at 200r / min for 8h. Then, serial dilutions of different concentrations were prepared by ten-fold dilution and added to the sterilized soil, and the number of Escherichia coli was counted by plate colony counting method and MPN counting method, respectively.
[0034] Plate colony count method refers to the literature [Shen Ping, Fan Xiurong, Li Guangwu. Microbiology Experiments [M]. Beijing: Higher Education Press, 1999, 92-94. ], firstly carry out gradient dilution on the soil bacterial suspension prepared above, take 0.1ml of the bacterial suspension with appropriate dilution and spread it on the LB mediu...
Embodiment 2
[0048] The specificity of the PCR detection method mainly depends on the specificity of the primers, so the selection of the target gene should have species or genus specificity in order to avoid the occurrence of false positives. According to the phoA gene sequence of Escherichia coli, reference [Kong RY, DungW F, Vrijmoed L L, et al. Marine Pollution Bulletin, 1995, 31(4): 317-3241. 】Primer design software Primer 5.0 was used to design primers. The amplified fragment of the primers was 684bp. The above two pairs of primers were synthesized by Shanghai Yingjun Company. The specific sequence is as follows: phoA-1: 5'-TACAGGTGACTGCGGGCTTATC-3', phoA-2: 5'-CTTACCGGGCAATACACTCACTA-3'.
[0049] Using phoA-specific primers of Escherichia coli for Bacillus subtilis 168, Pseudomonas putida KT2440, Agrobacterium, Brevibacterium, Microbacterium cellulosus, Microbacterium, Pseudomonas, Rhodococcus, Salmonella, Escherichia coli DH5α, etc. 10 The strains were subjected to conventional b...
Embodiment 3
[0051] There are a lot of humic acid and metal ions in the soil, and their existence will seriously affect the activity of Taq enzyme in the PCR reaction, which may lead to the failure of the PCR reaction. In order to improve the efficiency of PCR detection and obtain a clean DNA template that can amplify the target band, usually the DNA template is obtained by phenol / chloroform extraction. It is toxic and is not suitable for DNA preparation of a large number of samples. According to past experience, even if DNA can be extracted, the target band must be amplified after recovery and purification of DNA samples due to the large amount of impurities in the soil. In order to simplify the procedure of template preparation, this method was compared with other commonly used simple methods.
[0052] Escherichia coli proliferation method, PCR system, conditions and electrophoresis method are all the same as in Example 4.
[0053] Method 1: Direct amplification of the enrichment soluti...
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