Oligomers with improved off-target profile
A technology of oligomers and monomers, applied in the field of oligomers and oligonucleotides
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[0176] In this example, the affinity of various oligos to the target of interest as well as to off-target RNA was measured. Finally, the affinity of the oligos to the target RNA consisting of the consensus sequence is measured.
[0177] The target RNA used was first:
[0178] (135-Hcvtarg)5'GAUGGGGGCG ACACUCCA CCAUGAAU
[0179] where the consensus sequence is underlined.
[0180] Sequence of the oligomer complementary to the target RNA:
[0181] CUGUGAGGUGGUAC-5'
[0182] and when combined with each other:
[0183] Target: 5'GAUGGGGGCG ACACUCCA CCAUGAAU
[0184] |||||||||||||||
[0185] HCV oligomer CUGUGAGGUGGUAC5'
[0186] First, use the following oligos, where the lower affinity region is underlined:
[0187] (123-HCVtm, uniformly modified):
[0188] lClAmUmGlGmUlGlGmAlGmUmGlTlC
[0189] (124-HCVtm, lower affinity region complementary to the consensus sequence):
[0190] lClAlTlGlGlT mGmGmAmGmUm GlUlC
[0191] (125-HCV, lower affinity regio...
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